yum update not working due to dependencies, which are not installed??

10 posts / 0 new
Last post
#1 Tue, 02/18/2014 - 05:56

yum update not working due to dependencies, which are not installed??

I run yum update and get the below errors. I thought yum is supposed to deal with dependencies.

I need to update it because I want to install DKIM for email but that fails with similar errors.


Transaction Summary
Install      38 Package(s)
Upgrade      38 Package(s)

Total size: 153 M
Is this ok [y/N]: y
Downloading Packages:
Running rpm_check_debug
ERROR with rpm_check_debug vs depsolve:
libcrypto.so.10 is needed by mysql-libs-5.1.73-3.el6_5.i686
libcrypto.so.10(libcrypto.so.10) is needed by mysql-libs-5.1.73-3.el6_5.i686
libssl.so.10 is needed by mysql-libs-5.1.73-3.el6_5.i686
libssl.so.10(libssl.so.10) is needed by mysql-libs-5.1.73-3.el6_5.i686
libnspr4.so is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.10) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.11) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.11.1) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.12) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.12.1) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.12.5) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.12.9) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.2) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.3) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.4) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.6) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.8) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.9.2) is needed by openldap-2.4.23-34.el6_5.1.i686
libnss3.so(NSS_3.9.3) is needed by openldap-2.4.23-34.el6_5.1.i686
libnssutil3.so is needed by openldap-2.4.23-34.el6_5.1.i686
libplc4.so is needed by openldap-2.4.23-34.el6_5.1.i686
libplds4.so is needed by openldap-2.4.23-34.el6_5.1.i686
libsmime3.so is needed by openldap-2.4.23-34.el6_5.1.i686
libssl3.so is needed by openldap-2.4.23-34.el6_5.1.i686
libssl3.so(NSS_3.2) is needed by openldap-2.4.23-34.el6_5.1.i686
libssl3.so(NSS_3.4) is needed by openldap-2.4.23-34.el6_5.1.i686
libssl3.so(NSS_3.7.4) is needed by openldap-2.4.23-34.el6_5.1.i686
libcrypto.so.10 is needed by openssl-devel-1.0.1e-16.el6_5.4.i686
libssl.so.10 is needed by openssl-devel-1.0.1e-16.el6_5.4.i686
libmysqlclient.so.16()(64bit) is needed by mysql-5.1.73-3.el6_5.x86_64
libmysqlclient.so.16(libmysqlclient_16)(64bit) is needed by mysql-5.1.73-3.el6_5.x86_64
libmysqlclient_r.so.16()(64bit) is needed by mysql-5.1.73-3.el6_5.x86_64
libmysqlclient_r.so.16(libmysqlclient_16)(64bit) is needed by mysql-5.1.73-3.el6_5.x86_64
libmysqlclient.so.16()(64bit) is needed by mysql-server-5.1.73-3.el6_5.x86_64
libmysqlclient.so.16(libmysqlclient_16)(64bit) is needed by mysql-server-5.1.73-3.el6_5.x86_64
libmysqlclient_r.so.16()(64bit) is needed by mysql-server-5.1.73-3.el6_5.x86_64
libmysqlclient_r.so.16(libmysqlclient_16)(64bit) is needed by mysql-server-5.1.73-3.el6_5.x86_64
libnss3.so is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so is needed by (installed) elinks-0.12-0.21.pre5.el6_3.i686
libnss3.so is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so is needed by (installed) curl-7.19.7-37.el6_4.i686
libnss3.so is needed by (installed) rpm-libs-4.8.0-37.el6.i686
libnss3.so is needed by (installed) rpm-4.8.0-37.el6.i686
libnss3.so is needed by (installed) mailx-12.4-7.el6.i686
libnss3.so is needed by (installed) openssh-5.3p1-94.el6.i686
libnss3.so is needed by (installed) rpm-python-4.8.0-37.el6.i686
libnss3.so is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libnss3.so is needed by (installed) openssh-server-5.3p1-94.el6.i686
libnss3.so is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.10) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.10) is needed by (installed) rpm-libs-4.8.0-37.el6.i686
libnss3.so(NSS_3.11) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.11.2) is needed by (installed) rpm-libs-4.8.0-37.el6.i686
libnss3.so(NSS_3.12) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.12) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.12) is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libnss3.so(NSS_3.12.1) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.12.5) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.2) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.2) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.2) is needed by (installed) rpm-libs-4.8.0-37.el6.i686
libnss3.so(NSS_3.2) is needed by (installed) mailx-12.4-7.el6.i686
libnss3.so(NSS_3.2) is needed by (installed) openssh-5.3p1-94.el6.i686
libnss3.so(NSS_3.2) is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libnss3.so(NSS_3.2) is needed by (installed) openssh-server-5.3p1-94.el6.i686
libnss3.so(NSS_3.2) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.3) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.3) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.3) is needed by (installed) openssh-5.3p1-94.el6.i686
libnss3.so(NSS_3.3) is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libnss3.so(NSS_3.3) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.4) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.4) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.4) is needed by (installed) rpm-libs-4.8.0-37.el6.i686
libnss3.so(NSS_3.4) is needed by (installed) mailx-12.4-7.el6.i686
libnss3.so(NSS_3.4) is needed by (installed) openssh-5.3p1-94.el6.i686
libnss3.so(NSS_3.4) is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libnss3.so(NSS_3.4) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.5) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.5) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.5) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.6) is needed by (installed) openssh-5.3p1-94.el6.i686
libnss3.so(NSS_3.6) is needed by (installed) openssh-server-5.3p1-94.el6.i686
libnss3.so(NSS_3.6) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.7) is needed by (installed) mailx-12.4-7.el6.i686
libnss3.so(NSS_3.9) is needed by (installed) openssh-5.3p1-94.el6.i686
libnss3.so(NSS_3.9) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.9.2) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.9.2) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.9.2) is needed by (installed) openssh-5.3p1-94.el6.i686
libnss3.so(NSS_3.9.2) is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libnss3.so(NSS_3.9.2) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libnss3.so(NSS_3.9.3) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnss3.so(NSS_3.9.3) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnss3.so(NSS_3.9.3) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libsmime3.so is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libsmime3.so is needed by (installed) elinks-0.12-0.21.pre5.el6_3.i686
libsmime3.so is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libsmime3.so is needed by (installed) curl-7.19.7-37.el6_4.i686
libsmime3.so is needed by (installed) mailx-12.4-7.el6.i686
libsmime3.so is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libsmime3.so(NSS_3.2) is needed by (installed) mailx-12.4-7.el6.i686
libsmime3.so(NSS_3.6) is needed by (installed) mailx-12.4-7.el6.i686
libssl3.so is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libssl3.so is needed by (installed) elinks-0.12-0.21.pre5.el6_3.i686
libssl3.so is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libssl3.so is needed by (installed) curl-7.19.7-37.el6_4.i686
libssl3.so is needed by (installed) mailx-12.4-7.el6.i686
libssl3.so is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libssl3.so(NSS_3.11.4) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libssl3.so(NSS_3.2) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libssl3.so(NSS_3.2) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libssl3.so(NSS_3.2) is needed by (installed) mailx-12.4-7.el6.i686
libssl3.so(NSS_3.2) is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libssl3.so(NSS_3.4) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libssl3.so(NSS_3.4) is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libssl3.so(NSS_3.7.4) is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libcrypto.so.10 is needed by (installed) postfix-2:2.6.6-2.2.el6_1.i686
libcrypto.so.10 is needed by (installed) fipscheck-1.2.0-7.el6.i686
libcrypto.so.10 is needed by (installed) perl-Net-SSLeay-1.35-9.el6.i686
libcrypto.so.10 is needed by (installed) perl-DBD-MySQL-4.013-3.el6.i686
libcrypto.so.10 is needed by (installed) perl-Crypt-OpenSSL-Random-0.04-9.1.el6.i686
libcrypto.so.10 is needed by (installed) perl-Crypt-OpenSSL-Bignum-0.04-8.1.el6.i686
libcrypto.so.10 is needed by (installed) perl-Crypt-OpenSSL-RSA-0.25-10.1.el6.i686
libcrypto.so.10 is needed by (installed) libc-client-2007e-11.el6.i686
libcrypto.so.10 is needed by (installed) perl-Crypt-SSLeay-0.57-16.el6.i686
libcrypto.so.10 is needed by (installed) tcpdump-14:4.0.0-3.20090921gitdf3cb4.2.el6.i686
libcrypto.so.10 is needed by (installed) libssh2-1.4.2-1.el6.i686
libcrypto.so.10 is needed by (installed) cyrus-sasl-2.1.23-13.el6_3.1.i686
libcrypto.so.10 is needed by (installed) cyrus-sasl-md5-2.1.23-13.el6_3.1.i686
libcrypto.so.10 is needed by (installed) httpd-tools-1:2.2.15-29.el6.vm.1.i686
libcrypto.so.10 is needed by (installed) mod_ssl-2:2.2.15-29.el6.vm.1.i686
libcrypto.so.10 is needed by (installed) postgresql-libs-8.4.18-1.el6_4.i686
libcrypto.so.10 is needed by (installed) ruby-libs-
libcrypto.so.10 is needed by (installed) net-snmp-libs-1:5.5-49.el6.i686
libcrypto.so.10 is needed by (installed) openssh-5.3p1-94.el6.i686
libcrypto.so.10 is needed by (installed) net-snmp-1:5.5-49.el6.i686
libcrypto.so.10 is needed by (installed) php-cli-5.3.3-27.el6_5.i686
libcrypto.so.10 is needed by (installed) ntpdate-4.2.6p5-1.el6.centos.i686
libcrypto.so.10 is needed by (installed) ntp-4.2.6p5-1.el6.centos.i686
libcrypto.so.10 is needed by (installed) php-5.3.3-27.el6_5.i686
libcrypto.so.10 is needed by (installed) postgresql-server-8.4.18-1.el6_4.i686
libcrypto.so.10 is needed by (installed) openssh-server-5.3p1-94.el6.i686
libcrypto.so.10 is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libcrypto.so.10 is needed by (installed) php-mysql-5.3.3-27.el6_5.i686
libcrypto.so.10 is needed by (installed) spamassassin-3.3.1-3.el6.i686
libcrypto.so.10 is needed by (installed) php-imap-5.3.3-27.el6_5.i686
libcrypto.so.10 is needed by (installed) dovecot-1:2.0.9-7.el6.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) net-snmp-libs-1:5.5-49.el6.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) openssh-5.3p1-94.el6.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) php-cli-5.3.3-27.el6_5.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) ntpdate-4.2.6p5-1.el6.centos.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) ntp-4.2.6p5-1.el6.centos.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) php-5.3.3-27.el6_5.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) openssh-server-5.3p1-94.el6.i686
libcrypto.so.10(OPENSSL_1.0.1) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) ruby-libs-
libcrypto.so.10(libcrypto.so.10) is needed by (installed) net-snmp-libs-1:5.5-49.el6.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) openssh-5.3p1-94.el6.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) php-cli-5.3.3-27.el6_5.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) ntpdate-4.2.6p5-1.el6.centos.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) ntp-4.2.6p5-1.el6.centos.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) php-5.3.3-27.el6_5.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) openssh-server-5.3p1-94.el6.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libcrypto.so.10(libcrypto.so.10) is needed by (installed) dovecot-1:2.0.9-7.el6.i686
libssl.so.10 is needed by (installed) postfix-2:2.6.6-2.2.el6_1.i686
libssl.so.10 is needed by (installed) perl-Net-SSLeay-1.35-9.el6.i686
libssl.so.10 is needed by (installed) perl-DBD-MySQL-4.013-3.el6.i686
libssl.so.10 is needed by (installed) perl-Crypt-OpenSSL-Random-0.04-9.1.el6.i686
libssl.so.10 is needed by (installed) perl-Crypt-OpenSSL-RSA-0.25-10.1.el6.i686
libssl.so.10 is needed by (installed) libc-client-2007e-11.el6.i686
libssl.so.10 is needed by (installed) perl-Crypt-SSLeay-0.57-16.el6.i686
libssl.so.10 is needed by (installed) libssh2-1.4.2-1.el6.i686
libssl.so.10 is needed by (installed) httpd-tools-1:2.2.15-29.el6.vm.1.i686
libssl.so.10 is needed by (installed) mod_ssl-2:2.2.15-29.el6.vm.1.i686
libssl.so.10 is needed by (installed) postgresql-libs-8.4.18-1.el6_4.i686
libssl.so.10 is needed by (installed) ruby-libs-
libssl.so.10 is needed by (installed) postgresql-8.4.18-1.el6_4.i686
libssl.so.10 is needed by (installed) php-cli-5.3.3-27.el6_5.i686
libssl.so.10 is needed by (installed) php-5.3.3-27.el6_5.i686
libssl.so.10 is needed by (installed) postgresql-server-8.4.18-1.el6_4.i686
libssl.so.10 is needed by (installed) php-mysql-5.3.3-27.el6_5.i686
libssl.so.10 is needed by (installed) spamassassin-3.3.1-3.el6.i686
libssl.so.10 is needed by (installed) php-imap-5.3.3-27.el6_5.i686
libssl.so.10 is needed by (installed) dovecot-1:2.0.9-7.el6.i686
libssl.so.10(libssl.so.10) is needed by (installed) ruby-libs-
libssl.so.10(libssl.so.10) is needed by (installed) php-cli-5.3.3-27.el6_5.i686
libssl.so.10(libssl.so.10) is needed by (installed) php-5.3.3-27.el6_5.i686
libssl.so.10(libssl.so.10) is needed by (installed) spamassassin-3.3.1-3.el6.i686
libssl.so.10(libssl.so.10) is needed by (installed) dovecot-1:2.0.9-7.el6.i686
libnssutil3.so is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnssutil3.so is needed by (installed) elinks-0.12-0.21.pre5.el6_3.i686
libnssutil3.so is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnssutil3.so is needed by (installed) curl-7.19.7-37.el6_4.i686
libnssutil3.so is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libnssutil3.so is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libnssutil3.so(NSSUTIL_3.12) is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libnssutil3.so(NSSUTIL_3.12.3) is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libnssutil3.so(NSSUTIL_3.13) is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libnssutil3.so(NSSUTIL_3.14) is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libpython2.6.so.1.0 is needed by (installed) yum-metadata-parser-1.1.2-16.el6.i686
libpython2.6.so.1.0 is needed by (installed) pygpgme-0.1-18.20090824bzr68.el6.i686
libpython2.6.so.1.0 is needed by (installed) python-pycurl-7.19.0-8.el6.i686
libpython2.6.so.1.0 is needed by (installed) vim-enhanced-2:7.2.411-1.8.el6.i686
libpython2.6.so.1.0 is needed by (installed) mailman-3:2.1.12-18.el6.i686
libpython2.6.so.1.0 is needed by (installed) libxml2-python-2.7.6-14.el6.i686
libpython2.6.so.1.0 is needed by (installed) rpm-python-4.8.0-37.el6.i686
libpython2.6.so.1.0 is needed by (installed) python-ethtool-0.6-5.el6.i686
libnspr4.so is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libnspr4.so is needed by (installed) elinks-0.12-0.21.pre5.el6_3.i686
libnspr4.so is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libnspr4.so is needed by (installed) curl-7.19.7-37.el6_4.i686
libnspr4.so is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libnspr4.so is needed by (installed) mailx-12.4-7.el6.i686
libnspr4.so is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libplc4.so is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libplc4.so is needed by (installed) elinks-0.12-0.21.pre5.el6_3.i686
libplc4.so is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libplc4.so is needed by (installed) curl-7.19.7-37.el6_4.i686
libplc4.so is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libplc4.so is needed by (installed) mailx-12.4-7.el6.i686
libplc4.so is needed by (installed) openssh-5.3p1-94.el6.i686
libplc4.so is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
libplc4.so is needed by (installed) openssh-clients-5.3p1-94.el6.i686
libplds4.so is needed by (installed) nss_compat_ossl-0.9.6-1.el6.i686
libplds4.so is needed by (installed) elinks-0.12-0.21.pre5.el6_3.i686
libplds4.so is needed by (installed) libcurl-7.19.7-37.el6_4.i686
libplds4.so is needed by (installed) curl-7.19.7-37.el6_4.i686
libplds4.so is needed by (installed) nss-softokn-3.14.3-9.el6.i686
libplds4.so is needed by (installed) abrt-addon-ccpp-2.0.8-21.el6.centos.i686
You could try running: rpm -Va --nofiles --nodigest
Your transaction was saved, rerun it with: yum load-transaction /tmp/yum_save_tx-2014-02-18-11-28razYrZ.yumtx
Tue, 02/18/2014 - 05:56

some other posts online state could be a repo clash... so yum repolist shows this:

repo id repo name status

base CentOS-6 - Base 6,367

cloudmin-universal Cloudmin Distribution Neutral 141

epel Extra Packages for Enterprise Linux 6 - x86_64 10,487

extras CentOS-6 - Extras 14

newrelic New Relic packages for Enterprise Linux 5 - x86_64 5

updates CentOS-6 - Updates 518

varnish-3.0 Varnish 3.0 for Enterprise Linux 5 - x86_64 54

virtualmin RHEL/CentOS/Scientific 6 - x86_64 - Virtualmin 102

virtualmin-universal Virtualmin Distribution Neutral Packages 185

Tue, 02/18/2014 - 05:59

This command does not output anything:

rpm -Va --nofiles --nodigest

Tue, 02/18/2014 - 06:06

Here is the strange thing... this server is a clone of another from Linode. Basically I created a new VPS with Linode, and cloned a backup from another server to this one.

The original server all updated fine. This new server shows the errors. Yet they should be identical apart from IP/hostname.

Tue, 02/18/2014 - 08:57


What is the output of this command:

uname -a

Also, can you show the packages that it's trying to update? Seeing what repository those are coming from may help us figure out what the problem is.

However, you could always try disabling the EPEL, newrelic, and Varnish repositories, as those are all third party repositories and could cause the problem you're seeing.


Tue, 02/18/2014 - 12:36

uname -s is: Linux myhostname.co.uk 3.12.9-x86_64-linodexx #1 SMP Mon Feb 3 10:01:02 EST 2014 x86_64 x86_64 x86_64 GNU/Linux

(myhostname.co.uk is of course changed, I dont see a reason to advertise it? and linodexx)

I disabled those repos, but still get the same issue:

Here's what yum updates shows:


Package                                          Arch                           Version                                           Repository                       Size



bind                                             x86_64                         32:9.8.2-0.23.rc1.el6_5.1                         updates                         4.0 M

bind-libs                                        i686                           32:9.8.2-0.23.rc1.el6_5.1                         updates                         891 k

bind-utils                                       x86_64                         32:9.8.2-0.23.rc1.el6_5.1                         updates                         182 k

ca-certificates                                  noarch                         2013.1.95-65.1.el6_5                              updates                         1.1 M

ethtool                                          x86_64                         2:3.5-1.2.el6_5                                   updates                         100 k

irqbalance                                       x86_64                         2:1.0.4-8.el6_5                                   updates                          37 k

kernel-firmware                                  noarch                         2.6.32-431.5.1.el6                                updates                          13 M

kernel-headers                                   x86_64                         2.6.32-431.5.1.el6                                updates                         2.8 M

mysql                                            x86_64                         5.1.73-3.el6_5                                    updates                         894 k

mysql-devel                                      i686                           5.1.73-3.el6_5                                    updates                         129 k

mysql-libs                                       i686                           5.1.73-3.el6_5                                    updates                         1.2 M

mysql-server                                     x86_64                         5.1.73-3.el6_5                                    updates                         8.6 M

nspr                                             i686                           4.10.2-1.el6_5                                    updates                         115 k

nss                                              i686                           3.15.3-6.el6_5                                    updates                         826 k

nss-sysinit                                      x86_64                         3.15.3-6.el6_5                                    updates                          40 k

nss-tools                                        x86_64                         3.15.3-6.el6_5                                    updates                         358 k

nss-util                                         i686                           3.15.3-1.el6_5                                    updates                          64 k

openldap                                         i686                           2.4.23-34.el6_5.1                                 updates                         267 k

openssl                                          i686                           1.0.1e-16.el6_5.4                                 updates                         1.5 M

openssl-devel                                    i686                           1.0.1e-16.el6_5.4                                 updates                         1.2 M

p11-kit                                          i686                           0.18.5-2.el6_5.2                                  updates                          93 k

p11-kit-trust                                    i686                           0.18.5-2.el6_5.2                                  updates                          68 k

pixman                                           i686                           0.26.2-5.1.el6_5                                  updates                         206 k

python                                           x86_64                         2.6.6-52.el6                                      updates                          74 k

python-libs                                      i686                           2.6.6-52.el6                                      updates                         5.3 M

tzdata                                           noarch                         2013i-2.el6                                       updates                         448 k

wget                                             x86_64                         1.12-1.11.el6_5                                   updates                         483 k

yum                                              noarch                         3.2.29-43.el6.centos                              updates                         996 k

yum-plugin-fastestmirror                         noarch                         1.1.30-17.el6_5                                   updates                          28 k

yum-plugin-security                              noarch                         1.1.30-17.el6_5                                   updates                          38 k

yum-utils                                        noarch                         1.1.30-17.el6_5                                   updates                         102 k

Installing for dependencies:

bind-libs                                        x86_64                         32:9.8.2-0.23.rc1.el6_5.1                         updates                         879 k

bzip2-libs                                       x86_64                         1.0.5-7.el6_0                                     base                             36 k

db4                                              x86_64                         4.7.25-18.el6_4                                   base                            563 k

expat                                            x86_64                         2.0.1-11.el6_2                                    base                             76 k

gdbm                                             x86_64                         1.8.0-36.el6                                      base                             29 k

glibc                                            x86_64                         2.12-1.132.el6                                    base                            3.8 M

keyutils-libs                                    x86_64                         1.4-4.el6                                         base                             20 k

krb5-libs                                        x86_64                         1.10.3-10.el6_4.6                                 base                            761 k

libattr                                          x86_64                         2.4.44-7.el6                                      base                             15 k

libcap                                           x86_64                         2.16-5.5.el6                                      base                             32 k

libcap-ng                                        x86_64                         0.6.4-3.el6_0.1                                   base                             21 k

libcom_err                                       x86_64                         1.41.12-18.el6                                    base                             37 k

libffi                                           x86_64                         3.0.5-3.2.el6                                     base                             26 k

libgcc                                           x86_64                         4.4.7-4.el6                                       base                            101 k

libidn                                           x86_64                         1.18-2.el6                                        base                            205 k

libselinux                                       x86_64                         2.0.94-5.3.el6_4.1                                base                            108 k

libstdc++                                        x86_64                         4.4.7-4.el6                                       base                            293 k

libxml2                                          x86_64                         2.7.6-14.el6                                      base                            799 k

mysql-libs                                       x86_64                         5.1.73-3.el6_5                                    updates                         1.2 M

ncurses-libs                                     x86_64                         5.7-3.20090208.el6                                base                            246 k

nspr                                             x86_64                         4.10.2-1.el6_5                                    updates                         113 k

nss                                              x86_64                         3.15.3-6.el6_5                                    updates                         822 k

nss-softokn                                      x86_64                         3.14.3-9.el6                                      base                            265 k

nss-softokn-freebl                               x86_64                         3.14.3-9.el6                                      base                            157 k

nss-util                                         x86_64                         3.15.3-1.el6_5                                    updates                          64 k

numactl                                          x86_64                         2.0.7-8.el6                                       base                             69 k

openssl                                          x86_64                         1.0.1e-16.el6_5.4                                 updates                         1.5 M

python-libs                                      x86_64                         2.6.6-52.el6                                      updates                         5.3 M

readline                                         x86_64                         6.0-4.el6                                         base                            178 k

sqlite                                           x86_64                         3.6.20-1.el6                                      base                            301 k

zlib                                             x86_64                         1.2.3-29.el6                                      base                             73 k
Thu, 02/20/2014 - 04:12

Does anyone have an idea about this, or should I get a new server and re-install from scratch again?

i want to install Cloudmin on this server, and then enable DKIM, but I cant do either because yum fails.

As stated its really strange as this is a restore of a backup of another server, so should be identical, but the other server yum update worked OK!

Thu, 02/20/2014 - 04:20

OK I think I may have spotted the issue...

The original server that worked is i686, but this new one is x86_64. So somewhere along the line I must have chosen a 64bit computer (have no recollection of having that choice!) and then restored a 32bit backup onto it.

Thu, 02/20/2014 - 08:41

Yeah the issue that's happening is that there's a mix of 32 bit and 64 bit packages.

We've sometimes seen issues like that occur when a repository incorrectly includes a 32 bit dependency in a 64 bit package.

In that case, the fix is to remove the 32 bit packages, replacing them with 64 bit versions when necessary -- and ultimately removing the culprit with the incorrect dependency.

However, if you think the issue is related to restoring an incorrect backup onto this server, that could do it too.

It may be not trivial to fix, since it seems to be affecting a lot of them, though it's likely possible -- you could try reviewing the various packages on your system, and see if you're able to replace them with 64 bit versions.


Thu, 02/20/2014 - 11:27

I have spoken to Linode who say 64bit is a default setup for new servers now... so I restored a 32bit snapshot of a virtualmin server onto this 64bit machine. I did not realise this could happen, so overlooked it. So I am confident this is the issue as opposed to issues with packages and repos.

I have decided I will create a new server again, 64bit, install Virtualmin from scratch and then move the accounts over as I dont have many accounts as its a new server. I am familiar with this process and not trying to fix this issue!

So I would say this issue is solved now.


Topic locked