Nginx php-fpm, mariadb optimalization

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#1 Sun, 10/28/2018 - 18:48
adamus007p

Nginx php-fpm, mariadb optimalization

Hello,

I would like to optimaze Nginx php-fpm7.2, mariadb.

My you advise me how to optimize it? I have VPS, with 2shared CPU and 4GB RAM. Debian 9.5

Webmin version 1.894 Usermin version 1.741 Virtualmin version 6.04 Theme version Authentic Theme 19.20-beta2 Time on system Monday, October 29, 2018 12:42 AM Kernel and CPU Linux 4.9.0-8-amd64 on x86_64 Processor information QEMU Virtual CPU version 2.5+, 2 cores System uptime 53 days, 7 hours, 51 minutes Running processes 318 CPU load averages 2.68 (1 min) 2.10 (5 mins) 1.85 (15 mins) Real memory 1.86 GB used / 3.77 GB total Virtual memory 883.46 MB used / 1.86 GB total

my confing: /etc/php/7.2/fpm/pool.d/www.conf

; Start a new pool named 'www'.
; the variable $pool can we used in any directive and will be replaced by the
; pool name ('www' here)
[www]

; Per pool prefix
; It only applies on the following directives:
; - 'access.log'
; - 'slowlog'
; - 'listen' (unixsocket)
; - 'chroot'
; - 'chdir'
; - 'php_values'
; - 'php_admin_values'
; When not set, the global prefix (or /usr) applies instead.
; Note: This directive can also be relative to the global prefix.
; Default Value: none
;prefix = /path/to/pools/$pool

; Unix user/group of processes
; Note: The user is mandatory. If the group is not set, the default user's group
;       will be used.
user = www-data
group = www-data

; The address on which to accept FastCGI requests.
; Valid syntaxes are:
;   'ip.add.re.ss:port'    - to listen on a TCP socket to a specific IPv4 address on
;                            a specific port;
;   '[ip:6:addr:ess]:port' - to listen on a TCP socket to a specific IPv6 address on
;                            a specific port;
;   'port'                 - to listen on a TCP socket to all IPv4 addresses on a
;                            specific port;
;   '[::]:port'            - to listen on a TCP socket to all addresses
;                            (IPv6 and IPv4-mapped) on a specific port;
;   '/path/to/unix/socket' - to listen on a unix socket.
; Note: This value is mandatory.
listen = /run/php/php7.2-fpm.sock

; Set listen(2) backlog.
; Default Value: 65535 (-1 on FreeBSD and OpenBSD)
;listen.backlog = 65535

; Set permissions for unix socket, if one is used. In Linux, read/write
; permissions must be set in order to allow connections from a web server. Many
; BSD-derived systems allow connections regardless of permissions.
; Default Values: user and group are set as the running user
;                 mode is set to 0660
listen.owner = www-data
listen.group = www-data
;listen.mode = 0660
; When POSIX Access Control Lists are supported you can set them using
; these options, value is a comma separated list of user/group names.
; When set, listen.owner and listen.group are ignored
;listen.acl_users =
;listen.acl_groups =

; List of addresses (IPv4/IPv6) of FastCGI clients which are allowed to connect.
; Equivalent to the FCGI_WEB_SERVER_ADDRS environment variable in the original
; PHP FCGI (5.2.2+). Makes sense only with a tcp listening socket. Each address
; must be separated by a comma. If this value is left blank, connections will be
; accepted from any ip address.
; Default Value: any
;listen.allowed_clients = 127.0.0.1

; Specify the nice(2) priority to apply to the pool processes (only if set)
; The value can vary from -19 (highest priority) to 20 (lower priority)
; Note: - It will only work if the FPM master process is launched as root
;       - The pool processes will inherit the master process priority
;         unless it specified otherwise
; Default Value: no set
; process.priority = -19

; Set the process dumpable flag (PR_SET_DUMPABLE prctl) even if the process user
; or group is differrent than the master process user. It allows to create process
; core dump and ptrace the process for the pool user.
; Default Value: no
; process.dumpable = yes

; Choose how the process manager will control the number of child processes.
; Possible Values:
;   static  - a fixed number (pm.max_children) of child processes;
;   dynamic - the number of child processes are set dynamically based on the
;             following directives. With this process management, there will be
;             always at least 1 children.
;             pm.max_children      - the maximum number of children that can
;                                    be alive at the same time.
;             pm.start_servers     - the number of children created on startup.
;             pm.min_spare_servers - the minimum number of children in 'idle'
;                                    state (waiting to process). If the number
;                                    of 'idle' processes is less than this
;                                    number then some children will be created.
;             pm.max_spare_servers - the maximum number of children in 'idle'
;                                    state (waiting to process). If the number
;                                    of 'idle' processes is greater than this
;                                    number then some children will be killed.
;  ondemand - no children are created at startup. Children will be forked when
;             new requests will connect. The following parameter are used:
;             pm.max_children           - the maximum number of children that
;                                         can be alive at the same time.
;             pm.process_idle_timeout   - The number of seconds after which
;                                         an idle process will be killed.
; Note: This value is mandatory.
pm = dynamic

; The number of child processes to be created when pm is set to 'static' and the
; maximum number of child processes when pm is set to 'dynamic' or 'ondemand'.
; This value sets the limit on the number of simultaneous requests that will be
; served. Equivalent to the ApacheMaxClients directive with mpm_prefork.
; Equivalent to the PHP_FCGI_CHILDREN environment variable in the original PHP
; CGI. The below defaults are based on a server without much resources. Don't
; forget to tweak pm.* to fit your needs.
; Note: Used when pm is set to 'static', 'dynamic' or 'ondemand'
; Note: This value is mandatory.
; before was 100, 2500mb/ 8 = 300
pm.max_children = 300

; The number of child processes created on startup.
; Note: Used only when pm is set to 'dynamic'
; Default Value: min_spare_servers + (max_spare_servers - min_spare_servers) / 2
; before was 20
; my calculation 4+(8-4)/2  6
pm.start_servers = 6

; The desired minimum number of idle server processes.
; Note: Used only when pm is set to 'dynamic'
; Note: Mandatory when pm is set to 'dynamic'
; before was 10
pm.min_spare_servers = 4

; The desired maximum number of idle server processes.
; Note: Used only when pm is set to 'dynamic'
; Note: Mandatory when pm is set to 'dynamic'
; before was 20
pm.max_spare_servers = 8

; The number of seconds after which an idle process will be killed.
; Note: Used only when pm is set to 'ondemand'
; Default Value: 10s
;pm.process_idle_timeout = 10s;

; The number of requests each child process should execute before respawning.
; This can be useful to work around memory leaks in 3rd party libraries. For
; endless request processing specify '0'. Equivalent to PHP_FCGI_MAX_REQUESTS.
; Default Value: 0
pm.max_requests = 500

; The URI to view the FPM status page. If this value is not set, no URI will be
; recognized as a status page. It shows the following informations:
;   pool                 - the name of the pool;
;   process manager      - static, dynamic or ondemand;
;   start time           - the date and time FPM has started;
;   start since          - number of seconds since FPM has started;
;   accepted conn        - the number of request accepted by the pool;
;   listen queue         - the number of request in the queue of pending
;                          connections (see backlog in listen(2));
;   max listen queue     - the maximum number of requests in the queue
;                          of pending connections since FPM has started;
;   listen queue len     - the size of the socket queue of pending connections;
;   idle processes       - the number of idle processes;
;   active processes     - the number of active processes;
;   total processes      - the number of idle + active processes;
;   max active processes - the maximum number of active processes since FPM
;                          has started;
;   max children reached - number of times, the process limit has been reached,
;                          when pm tries to start more children (works only for
;                          pm 'dynamic' and 'ondemand');
; Value are updated in real time.
; Example output:
;   pool:                 www
;   process manager:      static
;   start time:           01/Jul/2011:17:53:49 +0200
;   start since:          62636
;   accepted conn:        190460
;   listen queue:         0
;   max listen queue:     1
;   listen queue len:     42
;   idle processes:       4
;   active processes:     11
;   total processes:      15
;   max active processes: 12
;   max children reached: 0
;
; By default the status page output is formatted as text/plain. Passing either
; 'html', 'xml' or 'json' in the query string will return the corresponding
; output syntax. Example:
;   http://www.foo.bar/status
;   http://www.foo.bar/status?json
;   http://www.foo.bar/status?html
;   http://www.foo.bar/status?xml
;
; By default the status page only outputs short status. Passing 'full' in the
; query string will also return status for each pool process.
; Example:
;   http://www.foo.bar/status?full
;   http://www.foo.bar/status?json&full
;   http://www.foo.bar/status?html&full
;   http://www.foo.bar/status?xml&full
; The Full status returns for each process:
;   pid                  - the PID of the process;
;   state                - the state of the process (Idle, Running, ...);
;   start time           - the date and time the process has started;
;   start since          - the number of seconds since the process has started;
;   requests             - the number of requests the process has served;
;   request duration     - the duration in µs of the requests;
;   request method       - the request method (GET, POST, ...);
;   request URI          - the request URI with the query string;
;   content length       - the content length of the request (only with POST);
;   user                 - the user (PHP_AUTH_USER) (or '-' if not set);
;   script               - the main script called (or '-' if not set);
;   last request cpu     - the %cpu the last request consumed
;                          it's always 0 if the process is not in Idle state
;                          because CPU calculation is done when the request
;                          processing has terminated;
;   last request memory  - the max amount of memory the last request consumed
;                          it's always 0 if the process is not in Idle state
;                          because memory calculation is done when the request
;                          processing has terminated;
; If the process is in Idle state, then informations are related to the
; last request the process has served. Otherwise informations are related to
; the current request being served.
; Example output:
;   ************************
;   pid:                  31330
;   state:                Running
;   start time:           01/Jul/2011:17:53:49 +0200
;   start since:          63087
;   requests:             12808
;   request duration:     1250261
;   request method:       GET
;   request URI:          /test_mem.php?N=10000
;   content length:       0
;   user:                 -
;   script:               /home/fat/web/docs/php/test_mem.php
;   last request cpu:     0.00
;   last request memory:  0
;
; Note: There is a real-time FPM status monitoring sample web page available
;       It's available in: /usr/share/php/5.6/fpm/status.html
;
; Note: The value must start with a leading slash (/). The value can be
;       anything, but it may not be a good idea to use the .php extension or it
;       may conflict with a real PHP file.
; Default Value: not set
;pm.status_path = /status

; The ping URI to call the monitoring page of FPM. If this value is not set, no
; URI will be recognized as a ping page. This could be used to test from outside
; that FPM is alive and responding, or to
; - create a graph of FPM availability (rrd or such);
; - remove a server from a group if it is not responding (load balancing);
; - trigger alerts for the operating team (24/7).
; Note: The value must start with a leading slash (/). The value can be
;       anything, but it may not be a good idea to use the .php extension or it
;       may conflict with a real PHP file.
; Default Value: not set
;ping.path = /ping

; This directive may be used to customize the response of a ping request. The
; response is formatted as text/plain with a 200 response code.
; Default Value: pong
;ping.response = pong

; The access log file
; Default: not set
;access.log = log/$pool.access.log

; The access log format.
; The following syntax is allowed
;  %%: the '%' character
;  %C: %CPU used by the request
;      it can accept the following format:
;      - %{user}C for user CPU only
;      - %{system}C for system CPU only
;      - %{total}C  for user + system CPU (default)
;  %d: time taken to serve the request
;      it can accept the following format:
;      - %{seconds}d (default)
;      - %{miliseconds}d
;      - %{mili}d
;      - %{microseconds}d
;      - %{micro}d
;  %e: an environment variable (same as $_ENV or $_SERVER)
;      it must be associated with embraces to specify the name of the env
;      variable. Some exemples:
;      - server specifics like: %{REQUEST_METHOD}e or %{SERVER_PROTOCOL}e
;      - HTTP headers like: %{HTTP_HOST}e or %{HTTP_USER_AGENT}e
;  %f: script filename
;  %l: content-length of the request (for POST request only)
;  %m: request method
;  %M: peak of memory allocated by PHP
;      it can accept the following format:
;      - %{bytes}M (default)
;      - %{kilobytes}M
;      - %{kilo}M
;      - %{megabytes}M
;      - %{mega}M
;  %n: pool name
;  %o: output header
;      it must be associated with embraces to specify the name of the header:
;      - %{Content-Type}o
;      - %{X-Powered-By}o
;      - %{Transfert-Encoding}o
;      - ....
;  %p: PID of the child that serviced the request
;  %P: PID of the parent of the child that serviced the request
;  %q: the query string
;  %Q: the '?' character if query string exists
;  %r: the request URI (without the query string, see %q and %Q)
;  %R: remote IP address
;  %s: status (response code)
;  %t: server time the request was received
;      it can accept a strftime(3) format:
;      %d/%b/%Y:%H:%M:%S %z (default)
;  %T: time the log has been written (the request has finished)
;      it can accept a strftime(3) format:
;      %d/%b/%Y:%H:%M:%S %z (default)
;  %u: remote user
;
; Default: "%R - %u %t "%m %r" %s"
;access.format = "%R - %u %t "%m %r%Q%q" %s %f %{mili}d %{kilo}M %C%%"

; The log file for slow requests
; Default Value: not set
; Note: slowlog is mandatory if request_slowlog_timeout is set
;slowlog = log/$pool.log.slow

; The timeout for serving a single request after which a PHP backtrace will be
; dumped to the 'slowlog' file. A value of '0s' means 'off'.
; Available units: s(econds)(default), m(inutes), h(ours), or d(ays)
; Default Value: 0
;request_slowlog_timeout = 0

; The timeout for serving a single request after which the worker process will
; be killed. This option should be used when the 'max_execution_time' ini option
; does not stop script execution for some reason. A value of '0' means 'off'.
; Available units: s(econds)(default), m(inutes), h(ours), or d(ays)
; Default Value: 0
;request_terminate_timeout = 0

; Set open file descriptor rlimit.
; Default Value: system defined value
;rlimit_files = 1024

; Set max core size rlimit.
; Possible Values: 'unlimited' or an integer greater or equal to 0
; Default Value: system defined value
;rlimit_core = 0

; Chroot to this directory at the start. This value must be defined as an
; absolute path. When this value is not set, chroot is not used.
; Note: you can prefix with '$prefix' to chroot to the pool prefix or one
; of its subdirectories. If the pool prefix is not set, the global prefix
; will be used instead.
; Note: chrooting is a great security feature and should be used whenever
;       possible. However, all PHP paths will be relative to the chroot
;       (error_log, sessions.save_path, ...).
; Default Value: not set
;chroot =

; Chdir to this directory at the start.
; Note: relative path can be used.
; Default Value: current directory or / when chroot
;chdir = /var/www

; Redirect worker stdout and stderr into main error log. If not set, stdout and
; stderr will be redirected to /dev/null according to FastCGI specs.
; Note: on highloaded environement, this can cause some delay in the page
; process time (several ms).
; Default Value: no
;catch_workers_output = yes

; Clear environment in FPM workers
; Prevents arbitrary environment variables from reaching FPM worker processes
; by clearing the environment in workers before env vars specified in this
; pool configuration are added.
; Setting to "no" will make all environment variables available to PHP code
; via getenv(), $_ENV and $_SERVER.
; Default Value: yes
;clear_env = no

; Limits the extensions of the main script FPM will allow to parse. This can
; prevent configuration mistakes on the web server side. You should only limit
; FPM to .php extensions to prevent malicious users to use other extensions to
; exectute php code.
; Note: set an empty value to allow all extensions.
; Default Value: .php
;security.limit_extensions = .php .php3 .php4 .php5

; Pass environment variables like LD_LIBRARY_PATH. All $VARIABLEs are taken from
; the current environment.
; Default Value: clean env
;env[HOSTNAME] = $HOSTNAME
;env[PATH] = /usr/local/bin:/usr/bin:/bin
;env[TMP] = /tmp
;env[TMPDIR] = /tmp
;env[TEMP] = /tmp

; Additional php.ini defines, specific to this pool of workers. These settings
; overwrite the values previously defined in the php.ini. The directives are the
; same as the PHP SAPI:
;   php_value/php_flag             - you can set classic ini defines which can
;                                    be overwritten from PHP call 'ini_set'.
;   php_admin_value/php_admin_flag - these directives won't be overwritten by
;                                     PHP call 'ini_set'
; For php_*flag, valid values are on, off, 1, 0, true, false, yes or no.

; Defining 'extension' will load the corresponding shared extension from
; extension_dir. Defining 'disable_functions' or 'disable_classes' will not
; overwrite previously defined php.ini values, but will append the new value
; instead.

; Note: path INI options can be relative and will be expanded with the prefix
; (pool, global or /usr)

; Default Value: nothing is defined by default except the values in php.ini and
;                specified at startup with the -d argument
;php_admin_value[sendmail_path] = /usr/sbin/sendmail -t -i -f www@my.domain.com
php_flag[display_errors] = on
php_admin_value[error_log] = /var/log/fpm-php.www.log
php_admin_flag[log_errors] = on
php_admin_value[memory_limit] = 512M

pool config 15xxxxxxxxx20.conf

[15xxxxxxxxxx520]
user = mywebsite
group = mywebsite
listen = 8000
pm = dynamic
pm.max_children = 300
pm.start_servers = 6
pm.min_spare_servers = 4
pm.max_spare_servers = 8
php_admin_value[upload_tmp_dir] = /home/mywebsite/tmp
php_admin_value[session.save_path] = /home/mywebsite/tmp
request_terminate_timeout = 30000
php_value[memory_limit] = 512M
php_value[session.save_path] = /home/mywebsite/tmp

my log /var/log/php7.2-fpm.log.1

[24-Oct-2018 12:41:15] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 23 total children
[24-Oct-2018 12:41:16] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 27 total children
[24-Oct-2018 12:52:16] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 8 children, there are 0 idle, and 15 total children
[24-Oct-2018 12:52:17] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 16 children, there are 0 idle, and 19 total children
[24-Oct-2018 12:52:18] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 23 total children
[24-Oct-2018 12:52:19] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 27 total children
[24-Oct-2018 12:52:20] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 31 total children
[24-Oct-2018 12:52:21] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 35 total children
[24-Oct-2018 12:52:22] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 39 total children
[24-Oct-2018 12:57:35] NOTICE: Terminating ...
[24-Oct-2018 12:57:35] NOTICE: exiting, bye-bye!
[24-Oct-2018 12:57:35] NOTICE: fpm is running, pid 14621
[24-Oct-2018 12:57:35] NOTICE: ready to handle connections
[24-Oct-2018 12:57:35] NOTICE: systemd monitor interval set to 10000ms
[24-Oct-2018 13:04:23] NOTICE: Terminating ...
[24-Oct-2018 13:04:23] NOTICE: exiting, bye-bye!
[24-Oct-2018 13:04:23] NOTICE: fpm is running, pid 17953
[24-Oct-2018 13:04:23] NOTICE: ready to handle connections
[24-Oct-2018 13:04:23] NOTICE: systemd monitor interval set to 10000ms
[24-Oct-2018 13:45:59] NOTICE: Terminating ...
[24-Oct-2018 13:45:59] NOTICE: exiting, bye-bye!
[24-Oct-2018 13:45:59] NOTICE: fpm is running, pid 26234
[24-Oct-2018 13:45:59] NOTICE: ready to handle connections
[24-Oct-2018 13:45:59] NOTICE: systemd monitor interval set to 10000ms
[24-Oct-2018 14:35:13] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 8 children, there are 0 idle, and 15 total children
[24-Oct-2018 14:35:14] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 16 children, there are 0 idle, and 19 total children
[24-Oct-2018 14:35:15] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 23 total children
[24-Oct-2018 14:35:16] WARNING: [pool 15265605044520] seems busy (you may need to increase pm.start_servers, or pm.min/max_spare_servers), spawning 32 children, there are 0 idle, and 27 total children

How should I set up correctly cofig?

pm.max_children = 300 pm.start_servers = 6 pm.min_spare_servers = 4 pm.max_spare_servers = 8 pm.max_requests = 500

php_flag[display_errors] = on php_admin_value[error_log] = /var/log/fpm-php.www.log php_admin_flag[log_errors] = on php_admin_value[memory_limit] = 512M

is it correct?

Mon, 10/29/2018 - 20:46
adamus007p

Hello,

I would like to optimaze Nginx php-fpm7.2, mariadb.

My you advise me how to optimize it? I have VPS, with 2shared CPU and 4GB RAM. Debian 9.5

Webmin version 1.894 Usermin version 1.741 Virtualmin version 6.04 Theme version Authentic Theme 19.20-beta2 Time on system Monday, October 29, 2018 12:42 AM Kernel and CPU Linux 4.9.0-8-amd64 on x86_64 Processor information QEMU Virtual CPU version 2.5+, 2 cores System uptime 53 days, 7 hours, 51 minutes Running processes 318 CPU load averages 2.68 (1 min) 2.10 (5 mins) 1.85 (15 mins) Real memory 1.86 GB used / 3.77 GB total Virtual memory 883.46 MB used / 1.86 GB total

my confing: /etc/php/7.2/fpm/pool.d/www.conf

How should I set up correctly cofig?

pm.max_children = 300 pm.start_servers = 6 pm.min_spare_servers = 4 pm.max_spare_servers = 8 pm.max_requests = 500

php_flag[display_errors] = on php_admin_value[error_log] = /var/log/fpm-php.www.log php_admin_flag[log_errors] = on php_admin_value[memory_limit] = 512M

is it correct?

Sat, 11/03/2018 - 18:48
marcelorp

Here is my PHP-FPM settings, I like to run in separated file to get all default setting into a single file.

/etc/php-fpm.d/www.conf

[username]
user = username
group = username
listen = /run/php-fpm/username.sock
slowlog = /home/username/logs/php_slow.log
php_admin_value[session.referer_check] = domain.tld
php_admin_value[session.cookie_domain] = domain.tld
php_admin_value[open_basedir] = /home/username/public_html/
php_admin_value[error_log] = /home/username/logs/php_error.log

; Temp
php_admin_value[session.save_path] = /home/username/tmp
php_admin_value[sys_temp_dir] = /home/username/tmp
php_admin_value[soap.wsdl_cache_dir] = /home/username/tmp
php_admin_value[opcache.file_cache] = /home/username/tmp
env[TMP] = /home/username/tmp
env[TMPDIR] = /home/username/tmp
env[TEMP] = /home/username/tmp

; Defaults
include=/etc/codebr/php-fpm/default.conf

; End


/etc/codebr/php-fpm/default.com

; File: /etc/codebr/php-fpm/default.conf
; Author: Marcelo Pavan
; Website: https://codebr.io
; Nginx version: 1.14.0
; PHP-FPM version: 7.2.11

; Default - PHP-FPM
pm = dynamic
pm.max_children = 9999
pm.start_servers = 5
pm.min_spare_servers = 5
pm.max_spare_servers = 35
chdir = /
listen.owner = nginx
listen.group = nginx
listen.mode = 0660
listen.allowed_clients = 127.0.0.1
security.limit_extensions = .php

; PHP.ini section
php_admin_value[upload_max_filesize] = 32M
php_admin_value[max_file_uploads] = 20
php_admin_value[post_max_size] = 32M
php_admin_value[memory_limit] = 256M
php_admin_value[max_execution_time] = 600
php_admin_value[max_input_time] = 600
php_admin_value[max_input_vars] = 1000
php_admin_flag[allow_url_fopen] = Off
php_admin_flag[allow_url_include] = Off

; Default - Forced
php_admin_value[output_buffering] = 4096
php_admin_value[disable_functions] =
php_admin_flag[expose_php] = Off
php_admin_flag[log_errors] = On
php_admin_flag[display_errors] = Off
php_admin_flag[display_startup_errors] = Off
php_admin_flag[enable_dl] = Off
php_admin_value[cgi.force_redirect] = 1
php_admin_value[session.save_handler] = files
php_admin_value[session.use_strict_mode] = 1
php_admin_value[session.cookie_secure] = 1
php_admin_value[session.use_cookies] = 1
php_admin_value[session.use_only_cookies] = 1
php_admin_value[session.use_trans_sid] = 0
php_admin_value[session.cookie_httponly] = 1

; Default - Unforced
php_value[date.timezone] = America/Sao_Paulo

; End


It must be tweak to fit in your needs.

All the admin tagged are settings that will overwrite the php.ini, so it will enforce that settings and ignore changes mades direct on php.ini. This will protect you from modifications in the domain php.ini with intention to get more resource than they need.

My MariaDB configuration is the same of the virtualmin generated for me on the initial script installer.

/etc/my.cnf

[mysqld]
datadir=/var/lib/mysql
socket=/var/lib/mysql/mysql.sock
symbolic-links=0
innodb_file_per_table = 1
thread_concurrency = 8
query_cache_size = 32M
thread_cache_size = 8
myisam_sort_buffer_size = 64M
read_rnd_buffer_size = 8M
read_buffer_size = 2M
sort_buffer_size = 2M
table_open_cache = 512
max_allowed_packet = 1M
key_buffer_size = 384M
local-infile=0

[mysqld_safe]
log-error=/var/log/mariadb/mariadb.log
pid-file=/var/run/mariadb/mariadb.pid

!includedir /etc/my.cnf.d



Tuning the kernel

Another thing you could do is to tune the kernel config...I'm using CentOS 7 and here is my settings:
/etc/sysctl.conf

## ::::::::::::::::::::
## ::: Sysctl :::::::::
## ::::::::::::::::::::
## ::: codebr.io ::::::
## ::::::::::::::::::::
## ::::::::::::::::::::
## ::: References :::::
## ::::::::::::::::::::
## ::: https://www.cyberciti.biz/faq/linux-kernel-etcsysctl-conf-security-hardening/
## ::: https://wiki.centos.org/FAQ/CentOS7
## ::: https://access.redhat.com/documentation/en-us/red_hat_enterprise_linux/6/html/performance_tuning_guide/s-memory-tunables
## ::::::::::::::::::::
## ::::::::::::::::::::
## ::::::::::::::::::::
## ::: Comands ::::::::
## ::::::::::::::::::::
## ::: reload: sysctl -p
## ::::::::::::::::::::

## ::::::::::::::::::::
## ::: Swap :::::::::::
## ::::::::::::::::::::
vm.swappiness = 10
vm.dirty_ratio = 15
vm.dirty_background_ratio = 3
vm.vfs_cache_pressure = 50

## ::::::::::::::::::::
## ::: Disable IPv6 :::
## ::::::::::::::::::::
net.ipv6.conf.all.disable_ipv6 = 1
net.ipv6.conf.default.disable_ipv6 = 1

## ::::::::::::::::::::
## ::: Turn timestamps off to reduce performance spikes related to timestamp generation
## ::::::::::::::::::::
net.ipv4.tcp_timestamps = 0

## ::::::::::::::::::::
## ::: Avoid a smurf attack
## ::::::::::::::::::::
net.ipv4.icmp_echo_ignore_all = 1
net.ipv4.icmp_echo_ignore_broadcasts = 1

## ::::::::::::::::::::
## ::: Turn on protection for bad icmp error messages
## ::::::::::::::::::::
net.ipv4.icmp_ignore_bogus_error_responses = 1

## ::::::::::::::::::::
## ::: Turn on syncookies for SYN flood attack protection
## ::::::::::::::::::::
net.ipv4.tcp_syncookies = 1
net.ipv4.tcp_synack_retries = 5
net.ipv4.tcp_max_syn_backlog = 32768

## ::::::::::::::::::::
## ::: Turn on and log spoofed, source routed, and redirect packets
## ::::::::::::::::::::
net.ipv4.conf.all.log_martians = 1
net.ipv4.conf.default.log_martians = 1

## ::::::::::::::::::::
## ::: No source routed packets here
## ::::::::::::::::::::
net.ipv4.conf.all.accept_source_route = 0
net.ipv4.conf.default.accept_source_route = 0

## ::::::::::::::::::::
## ::: Turn on reverse path filtering
## ::::::::::::::::::::
net.ipv4.conf.all.rp_filter = 1
net.ipv4.conf.default.rp_filter = 1

## ::::::::::::::::::::
## ::: Make sure no one can alter the routing tables
## ::::::::::::::::::::
net.ipv4.conf.all.accept_redirects = 0
net.ipv4.conf.default.accept_redirects = 0
net.ipv4.conf.all.secure_redirects = 0
net.ipv4.conf.default.secure_redirects = 0

## ::::::::::::::::::::
## ::: Don't act as a router
## ::::::::::::::::::::
net.ipv4.ip_forward = 0
net.ipv4.conf.all.send_redirects = 0
net.ipv4.conf.default.send_redirects = 0

## ::::::::::::::::::::
## ::: Turn on execshild
## ::::::::::::::::::::
# kernel.exec-shield = enable by default on CentOS 7x
kernel.randomize_va_space = 2

## ::::::::::::::::::::
## ::: TCP and memory optimization
## ::: increase TCP max buffer size setable using setsockopt()
## ::: increase Linux auto tuning TCP buffer limits
## ::::::::::::::::::::
net.core.rmem_max = 16777216
net.core.wmem_max = 16777216
net.ipv4.tcp_rmem = 4096 87380 16777216
net.ipv4.tcp_wmem = 4096 87380 16777216
net.ipv4.tcp_window_scaling = 1
net.core.netdev_max_backlog = 5000

## ::::::::::::::::::::
## ::: Optimization for port usefor LBs
## ::: increase system file descriptor limit
## ::::::::::::::::::::
fs.file-max = 131072
fs.suid_dumpable = 0
fs.protected_hardlinks = 1
fs.protected_symlinks = 1

## ::::::::::::::::::::
## ::: Allow for more PIDs (to reduce rollover problems); may break some programs 32768
## ::::::::::::::::::::
kernel.pid_max = 131072

## ::::::::::::::::::::
## ::: Change the amount of incoming connections and incoming connections backlog
## ::::::::::::::::::::
net.core.somaxconn = 65535
net.core.netdev_max_backlog = 262144

## ::::::::::::::::::::
## ::: Increase system IP port limits
## ::::::::::::::::::::
net.ipv4.ip_local_port_range = 2000 65000

## ::::::::::::::::::::
## ::: RFC 1337 fix
## ::::::::::::::::::::
net.ipv4.tcp_rfc1337 = 1

## ::::::::::::::::::::
## ::: End ::::::::::::
## ::::::::::::::::::::
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