Installing Joomla under subdirectory

I'm installing Joomla under under /site rather than / because of the way my server is set up.

I've tried the .htaccess way of redirecting my root directory to this one and hiding the URL.

But when you click a link or anything in the site the sub directory /site is visible.

Is there any way of hiding this subdirectory from the URL?

Closed (fixed)